Obtain id of the parents selected for the next generation based on the criteria chosen by the user

Usage

select_individual(
  phenotypes,
  microbiomes,
  genotypes,
  beta,
  beta_otu,
  selection,
  size_selection_F,
  size_selection_M,
  selection_type,
  size_rmultinom,
  w.param
)

Arguments

phenotypes: Phenotype values of the current generation given as the result of the combined effects of the microbiota and direct genetic effects. Typically get_phenotypes() output or compute_phenotypes().
microbiomes: Abundances for each individual of the current generation. Note: It is necessary to transform the abundances if they are CLR-transformed with the following command. microbiomes_clr |> t() |> clrInv() |> t()
genotypes: Genotypes values of the current generation. Typically from the MoBPS get.geno() function.
beta: Beta matrix from compute_beta_matrix_cluster() output.
beta_otu: Omega parameter from calibrate_params_phenotypes() output.
selection: bool, if selection process needed, DEFAULT = FALSE
size_selection_F: percentage of female to select.
size_selection_M: percentage of male to select.
selection_type: mode of selection to be used, value in ("GB", "B", "G", "diversity", "div.GB"), DEFAULT = "GB"
size_rmultinom: Integer; specifying the total number of object for the multinomial sampling(default: 10000, according to DeruPop.rds dataset).
w.param: in case div.GB selection mode is chosen.