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Useful function to extract phenotype values from RITHMS output ("gq" by default)

get_phenotypes_value.Rd

The gets functions use the output of holo_simu() to extract the information of interest from a given generation. get_phenotypes_values extract the set of phenotype values from a generation object.

Usage

get_phenotypes_value(data, value = "gq")

Arguments

data

List corresponding to one generation, as returned by holo_simu(). Containing simulation output.

value

A String caracter that precise the object to extract from the generation object. Must be "gq" to extract phenotype values.

Value

A data.frame of phenotype values for each individuals of a given generation.

See also

get_mean_phenotypes(), get_microbiomes(), get_om_beta_g(), get_selected_ind(), get_phenotypes()

Examples

if (FALSE) { # \dontrun{
library(magrittr)
library(purrr)
data("Deru")
ToyData <- Deru
taxa_assign_g <- assign_taxa(founder_object = ToyData)
generations_simu <- holo_simu(h2 = 0.25, b2 = 0.25, founder_object = ToyData,
                              n_clust = taxa_assign_g, n_ind = 500,
                              verbose = FALSE, seed = 1234)
                              
 #Extract phenotype values for each individuals of G1 generation
 G1_phenotypes_values <- get_phenotypes_value(generations_simu$G1)
 
 #Extract phenotype values for each individuals of all generations
 ## Don't forget to substract the metadata
 phenotypes_values <- generations_simu[-1] %>% map(get_phenotypes_value)
 } # }