Assign all taxa to a cluster, eventually under genetic control using hclust

Assign all taxa to a cluster, eventually under genetic control using hclust

Usage

assign_taxa(
  founder_object,
  taxa_g = 0.05,
  type = "hclust",
  taxonomy = NULL,
  seed = 123
)

Arguments

founder_object

Output of read_input_data function

taxa_g

Percentage of taxa under genetic control, DEFAULT = 0.1

Value

A vector with a length matching the total number of taxa with values from 0 to the number of clusters, 0 corresponding to the non under genetic control cluster

Examples

if (FALSE) { # \dontrun{
data("Deru")
ToyData <- Deru
taxa_assign_g <- assign_taxa(founder_object = ToyData,
           taxa_g = 0.2)
           } # }